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Home » Recipes » Snacks

Honey Spice Zucchini Muffins (Whole Wheat)

Last Modified: Apr 27, 2024 · Published: Oct 14, 2022 by Janessa · 11 Comments
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Filled with a cozy mixture of cinnamon and spices, these honey spice zucchini muffins will make you think of carrot cake! Made entirely with whole wheat flour and naturally sweetened, they have a perfectly moist and fluffy crumb. 

Jump to:
  • The Ingredients
  • The Method
  • Leftovers and Storage
  • Make it Your Own
  • Serving Suggestions
  • Tips and FAQS
  • More Ways to Use Zucchini!
  • Recipe Card
  • Comments
Zucchini spice muffins in a muffin tin with a red oven mitt in the background.

If September were a muffin, it would be these Honey Spice Zucchini Muffins.

Excess summer zucchini meets cozy autumn spices in a scrumptious muffin that is made with wholesome ingredients.

If you're looking for a muffin that is breakfast worthy (like these Blueberry Oat Muffins) yet also dessert worthy (did I mention these taste like CARROT CAKE?!), then these are for you.

Enjoy them as is for breakfast or a snack, or see the directions below for how to add a cheesecake filling and streusel topping for a real treat.

Either way, I recommend that you make a double batch. Because these muffins freeze beautifully.

And let's face it, you're going to love them and a single batch is going to disappear very quickly!

The Ingredients

Ingredients for whole wheat honey spice zucchini muffins.
  • Whole Wheat Flour- All purpose flour would work as well.
  • Baking Soda
  • Baking Powder
  • Fine Sea Salt
  • Cinnamon, Allspice, Cloves, Nutmeg, Ginger- You can substitute 1 tablespoon of a premixed pumpkin pie or apple pie spice mix.
  • Honey- Maple syrup would work as well. The flavor will be different but still delicious.
  • Coconut Oil- Avocado oil or olive oil can be used instead.
  • Applesauce- I love using my unsweetened homemade applesauce for these muffins but store bought will work as well
  • Vanilla Extract
  • Eggs
  • Zucchini- You need 2 cups of shredded zucchini which is about 1 small-medium zucchini. If you are using a large, late season zucchini, remove the large seeds and peel if the peeling is thick. You can also substitute with summer squash.

The Method

1. Mix batter. In a large bowl, whisk together the flour, baking soda, powder, salt and spices. In a medium bowl, combine the honey, oil, applesauce, vanilla and eggs. Stir the wet ingredients into the dry until just combined. Fold in the shredded zucchini.

A bowl of dry ingredients mixed, a bowl of wet ingredients mixed, a bowl combined and a bowl with the zucchini.

2. Divide into muffin tins. Line a regular muffin tin with 12 liners. Fill the liners nearly to the top. For slightly smaller muffins, you can fill them ⅔ full but it will yield 14 muffins so prepare an additional muffin tin.

Muffin batter divided amongst tins.

3. Bake. Bake at 350 F for 18-22 minutes until a toothpick inserted comes out mostly clean and the muffin bounces back slightly when you press on the centre.

Baked muffins in silicone liners.

4. Cool and enjoy. Allow muffins to cool in the tin for 5 minutes and then move to a wire rack to cool completely (or enjoy them while they are warm!).

Leftovers and Storage

To Store: Cool completely and then store in an airtight container at room temperature for up to 3 days.

To Freeze: Cooled muffins can be frozen for up to 3 months.

Muffin peeled from liner.

Make it Your Own

  • Top with Streusel- Melt ¼ cup of butter and mix with ¾ cup large flake rolled oats, ¼ cup brown sugar, 1 tablespoon whole wheat flour and ½ teaspoon cinnamon. Spoon crumbly mixture and then lightly pressthe top of filled muffin liners prior to baking.
  • Add a Cheesecake Filling- Whip together 8 oz cream cheese with 1 egg, 2 tablespoon white sugar and 1 teaspoon vanilla. Fill muffin liner ⅓, add about 1-1.5 tablespoon of cream cheese mixture and then top with additional batter to just below the top of the liner. Baking instructions remain the same. Adding the filling will yield 2-4 additional muffins so you will need to prep more tins.
  • Mix in some add-ins- Add up to 1 cup of chopped nuts, raisins, white chocolate chips or other favorite mix ins!

Serving Suggestions

Enjoy these muffins for an easy breakfast or snack on the go. You could also serve them for a wholesome dessert especially if you top them with Cream Cheese Frosting (they're the perfect way to finish off a dinner of Pumpkin Chicken Rice Soup!).

These honey spice zucchini muffins would also be a great contribution to a brunch spread or potluck alongside some bacon and hash browns, Greek Yogurt Frittata or quiche.

Honey Spice Zucchini Muffins with cheesecake filling stacked.
Muffins with cheesecake filling variation.

Tips and FAQS

Can I make these muffins with frozen zucchini?

Yes. In fact, I like to pre shred and freeze zucchini in 2 cup packages. Then, when ready to bake, take the zucchini out and set in a bowl to allow to thaw (about 1-2 hours). Lightly squeeze and drain the excess water that comes off and then add the zucchini to the recipe as directed.

More Ways to Use Zucchini!

  • Chocolate Zucchini Bread
  • Chocolate Zucchini Muffins (Oat Flour)
  • Baked Herb Tomato Zucchini

Recipe Card

Honey spice zucchini muffin partially peeled from liner.

Honey Spice Zucchini Muffins

Filled with a cozy mixture of cinnamon, nutmeg, cloves, allspice and ginger, these whole wheat muffins will make you think of carrot cake! Add an optional cheesecake filling and top with a streusel for an extra treat. 
5 from 49 votes
Print Pin Rate
Prep Time: 15 minutes minutes
Cook Time: 20 minutes minutes
Total Time: 35 minutes minutes
Servings: 12
Calories: 184kcal

Ingredients

  • 2 cups whole wheat flour
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1 teaspoon cinnamon
  • ½ teaspoon allspice
  • ½ teaspoon cloves
  • ½ teaspoon nutmeg
  • ½ teaspoon ginger
  • ½ teaspoon fine sea salt
  • ½ cup honey
  • ⅓ cup coconut oil melted
  • ½ cup apple sauce
  • 1 and ½ teaspoon vanilla extract
  • 2 large eggs
  • 2 cups shredded zucchini
US Customary - Metric
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Instructions

  • Preheat the oven to 350 °F. Line two muffin tins with enough for 14-16 muffins.
  • In a large bowl, whisk together flour, baking soda, baking powder, spices and salt.
  • In a medium bowl, combine honey, coconut oil, apple sauce, eggs and vanilla.
  • Pour the wet ingredients into the dry and mix until just combined. Fold in the zucchini.
  • Fill prepared muffin liners nearly full. Bake for 18-22 minutes until a toothpick poked in the center comes out mostly clean or the centers bounce back when lightly pressed.
  • Allow to cool in tins for 5 minutes and then remove to a wire rack and allow to cool completely.

Notes

Leftovers
Store leftovers in an airtight container at room temperature for up to 3 days or freeze for up to 3 months.

Nutrition

Calories: 184kcal | Carbohydrates: 28g | Protein: 4g | Fat: 7g | Saturated Fat: 5g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 1g | Trans Fat: 0.003g | Cholesterol: 31mg | Sodium: 238mg | Potassium: 156mg | Fiber: 3g | Sugar: 13g | Vitamin A: 92IU | Vitamin C: 4mg | Calcium: 38mg | Iron: 1mg
Did you make this recipe?Let me know what you thought in the comments below!

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  • Plantain chips in a bowl.
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« Whole Wheat Honey Blueberry Oat Muffins With Greek Yogurt
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Comments

    5 from 49 votes (43 ratings without comment)

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  1. Mirlene says

    July 28, 2022 at 11:54 am

    5 stars
    Love the spices used here. These muffins are a great way to sneak in some veggies for my kids. Hope they dont notice!

    Reply
    • Janessa says

      July 28, 2022 at 12:32 pm

      You're secret is safe with me 😉 I'm glad you enjoyed this recipe, Mirlene!

      Reply
  2. Cam says

    July 28, 2022 at 12:02 pm

    5 stars
    So yummy!! I topped mine with a streusel and they turned out amazing.

    Reply
    • Janessa says

      July 28, 2022 at 12:32 pm

      I'm glad you enjoyed this recipe, Cam!

      Reply
  3. Kelley says

    July 28, 2022 at 1:30 pm

    5 stars
    These were so good and had the perfect amount of spice! Thank you so much for sharing!

    Reply
  4. Carrie Robinson says

    July 28, 2022 at 2:22 pm

    5 stars
    I have zucchini in my fridge that I need to use up soon. I think I must may be baking up a batch of these this weekend. 🙂

    Reply
    • Janessa says

      July 28, 2022 at 4:26 pm

      I hope that you enjoy them!

      Reply
  5. Tavo says

    July 28, 2022 at 4:50 pm

    5 stars
    My first attempt at baking with zucchini and it was a total success!

    Reply
    • Janessa says

      July 30, 2022 at 12:35 am

      I'm glad you enjoyed this recipe, Tavo!

      Reply
  6. Sharon says

    October 21, 2024 at 8:37 pm

    5 stars
    These are so good. And I don’t feel the least bit guilty having a couple for breakfast. What a great way to use zucchini. A new favorite. Thanks

    Reply
    • Janessa says

      October 22, 2024 at 8:24 am

      I'm so glad you like this recipe, Sharon! Thank you for your kind review.

      Reply
Janessa

Hi, I'm Janessa and I'm passionate about sharing recipes that are made with wholesome ingredients, are quick and easy and most importantly, delicious!

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