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Home » Recipes » Desserts

Carrot Cupcakes with Oat Flour

Last Modified: Mar 26, 2024. Originally Published: Feb 20, 2024 by Janessa.

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Made entirely with oat flour for a gluten free twist on carrot cupcakes, these are tender with a perfect spice flavor. Using less sugar than traditional carrot cake recipes, they are just sweet enough and always a crowd pleaser- especially when topped with some cream cheese frosting!

Jump to:
  • Baking with Oat Flour
  • The Ingredients
  • The Method
  • Leftovers and Storage
  • Make it Your Own
  • Tips for the Best Oat Flour Carrot Cupcakes
  • And if you liked this recipe...
  • Recipe Card
  • Comments
Oat flour carrot cupcakes on a tray.

It's been my goal for some time to develop oat flour versions of all sorts of baked goods.

After perfecting cookies, I moved on to muffins, then brownies and banana bread.

And now I'm on to cakes. Well cupcakes to start.

Carrot cake is without a doubt, the favorite cake in my family and the one that most people ask me to make for their birthday cake (with cream cheese frosting of course!). So I've had a few chances to nail down this recipe.

However, just like banana muffins don't directly translate into oat flour banana bread, I've found that these cupcakes don't directly translate into a larger cake- it turns out too crumbly.

I'm working on the larger cake version so stay tuned for that. But in the meantime, I couldn't wait to share these cupcakes with you!

Baking with Oat Flour

Since oat flour doesn't have the gluten that wheat does to help with structure, oat flour baking tends to need extra binders to help hold it together and achieve the right texture.

While I am consistently experimenting with it and working on improving my recipes, it is important to note that it is normal for oat flour baked goods to be a bit more fragile and a bit more dense.

In order to minimize this, I highly recommend using store-bought oat flour, weighing the ingredients, taking care not to under-bake and sticking with the recipe as written for most consistent results.

The Ingredients

Ingredients for oat flour carrot cupcakes.
  • Oat Flour- Ensure you use certified gluten free oats/oat flour if you need the recipe to be gluten-free.
    • I recommend sifting the oat flour first if it is lumpy so that you don't have to overmix the cupcakes.
    • For best results, I also recommend that you use store-bought oat flour.
    • To Measure Oat Flour: If you have a kitchen scale, that is best for most accurate measurements of oat flour. But if you are measuring by hand, I have found that I can consistently achieve 120 g per cup of oat flour by scooping the oat flour into a measuring cup, lightly packing it down and then levelling off the top. See this oat flour snickerdoodles post for more details. *Select "metric" on the recipe card below the ingredients list to see the measurements displayed in grams.
  • Brown Sugar- For a less-refined sweetener, you can use coconut sugar instead.
  • Applesauce- Pumpkin puree, drained crushed pineapple or Greek yogurt will also work.
  • Avocado Oil- Melted coconut oil, olive oil or vegetable oil can be used.
  • Large Eggs
  • Grated Carrots- For best results, use fresh carrots and shred them yourself. It is not necessary to peel before grating but you can if you prefer.
  • Cinnamon- Adds key spice flavor to the carrot cupcakes.
  • Ginger- This can be omitted if needed, but I recommend using it.
  • Allspice- This can also be omitted if needed, but I recommend keeping it if you have it on hand.
  • Nutmeg- This too can be omitted if needed, but I highly recommend using it as well.
  • Baking Soda + Baking Powder- Because oat flour isn't structurally the same as regular flour, it needs both to achieve the same soft texture.
  • Fine Sea Salt
  • Vanilla Extract
  • Cream Cheese Frosting- Optional but not really...

The Method

1. Mix wet ingredients. In a medium bowl, whisk together the wet ingredients and brown sugar until combined.

Oil and eggs whisked together in a bowl with applesauce.

2. Mix dry ingredients. In a large bowl, whisk together the oat flour, spices, salt, baking soda and powder until mixed.

Dry ingredients whisked together in a large mixing bowl.

3. Combine. Pour the wet ingredients into the dry ingredients and whisk until just combined.

Wet and dry ingredients combined.

4. Fold in carrots. Use a rubber spatula to mix in the shredded carrots.

Carrots folded into a bowl of cake batter.

5. Bake. Line a muffin tin with 12 paper liners or silicone liners and divide the batter into each- you should be filling them about ⅔ full.

Bake in a 375 F preheated oven for 22-25 minutes until the center of the cupcake lightly springs back to the touch and a toothpick poked in the center contains just a few moist crumbs.

Cupcake batter divided into a muffin tin.

6. Cool. Allow the cupcakes to cool for 10 minutes in the pan and then move to a wire rack for an hour to finish cooling.

Baked cupcakes in a muffin tin.

7. Frost. Cream cheese frosting and spiced carrot cupcakes are the best pairing so I highly recommend spreading a batch of this easy cream cheese icing or maple cream cheese frosting on top!

Cupcakes being frosted with cream cheese topping.

8. Serve.

Leftovers and Storage

Make Ahead: Carrot cupcakes (and cake) taste even better the next day. You can make the cupcakes 1 day ahead and store in an airtight container at room temperature. Or decorate with cream cheese frosting and store in the refrigerator for up to 1 day ahead of serving.

To Store: Unfrosted cupcakes can be stored in an airtight container at room temperature for up to 3 days. Frosted cake should be stored in the refrigerator for up to 4 days.

To Freeze: Frosted or unfrosted oat flour cupcakes can be frozen for up to 3 months.

Frosted oat flour carrot cake cupcake with a bite taken out.

Make it Your Own

  • Pineapple Carrot Cupcakes- If you're a fan of pineapple carrot cake, use partly drained, crushed pineapple in place of the applesauce.
  • Incorporate Add Ins- If you love a chunky carrot cupcake, you can add up to ⅓ cup each (or up to 1 cup total):
    • Shredded Coconut Flakes
    • Chopped Nuts (toasted pecans are especially good)
    • Raisins
  • Use a Different Frosting- I'm partial to cream cheese frosting with carrot cupcakes but you could choose to leave it unfrosted or use one of the following instead:
    • Whipped Cream
    • Coconut Cream Frosting (if you need dairy free)
    • White Chocolate Frosting
    • Buttercream
Oat flour carrot cupcakes on a plate.
Do cupcakes with cream cheese frosting need to be refrigerated?

Yes, because the frosting contains cream cheese, they should be stored in the refrigerator.

Tips for the Best Oat Flour Carrot Cupcakes

  • Use Store-bought Oat Flour- Although you can make your own oat flour by grinding oats, unless you have a very high powered blender, I find it difficult to achieve the fine consistency that we need. You can give it a try if you need, but for best and most consistent results, I recommend sticking with store-bought.
  • Shred Your Own Carrots- Pre-shredded carrots tend to be quite dry and don't provide the moisture that we need for these cupcakes.
  • Don't Overmix- Over-mixing any muffin or cupcake batter can result in tough, unevenly baked goods so mix until the flour mixture is just incorporated. Sifting the oat flour can help it to mix in better.
  • Don't Under-bake- Oat flour baked goods tend to turn out gummy if under-baked. The cupcakes should spring back to the touch and a toothpick inserted into the center should come out clean.

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And if you liked this recipe...

...you might also like:

  • Classic Carrot Cake (with Less Sugar)
  • Applesauce Oat Flour Muffins
  • Chocolate Chip Oat Flour Muffins

Recipe Card

Carrot cupcake topped with cream cheese frosting with a bite taken out.

Oat Flour Carrot Cupcakes

With a tender crumb and superb spice flavor, these carrot cupcakes are made entirely with oat flour for a gluten free twist on a favorite dessert.
5 from 33 votes
Print Pin Rate
Prep Time: 15 minutes minutes
Cook Time: 30 minutes minutes
Cooling Time: 2 hours hours
Total Time: 2 hours hours 45 minutes minutes
Servings: 12
Calories: 185kcal

Ingredients

  • ½ cup brown sugar
  • ½ cup avocado oil or melted coconut oil or canola oil
  • ⅓ cup applesauce
  • 2 eggs
  • 1 teaspoon vanilla
  • 1 and ¼ cup oat flour lightly packed and levelled
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ¼ teaspoon salt
  • ¾ teaspoon cinnamon
  • ½ teaspoon ginger
  • ¼ teaspoon nutmeg
  • ¼ teaspoon cloves
  • 1 cup shredded carrots about 1 large
  • 2 cups Cream Cheese Frosting optional
US Customary - Metric
(Prevent your screen from going dark)

Instructions

  • Preheat the oven to 375 °F and a 12-count muffin tin with liners.
  • In a medium bowl, whisk together the brown sugar, oil, eggs, applesauce and vanilla until combined.
  • In a large bowl, whisk together the oat flour, baking powder, soda, salt and spices until mixed.
  • Pour the wet ingredients into the dry and whisk until just incorporated. Fold in the carrots. Divide the batter into prepared pan- the liners should be filled about ⅔ full.
  • Bake for 22-25 minutes until the centers lightly bounces back to the touch and a toothpick inserted into the center of a cupcakes contains just a few crumbs.
  • Remove from the oven and cool in the pan for 10 minutes and then move to a wire rack to cool for at least one hour.
  • Frost with cream cheese icing if desired and serve.

Notes

Leftovers
Store leftover unfrosted cake at room temperature for up to 3 days or freeze for up to 3 months. 
Frosted cupcakes should be kept in the refrigerator for up to 3 days or frozen for up to 3 months.
*Nutrition calculated without frosting.

Nutrition

Calories: 185kcal | Carbohydrates: 19g | Protein: 3g | Fat: 11g | Saturated Fat: 1g | Polyunsaturated Fat: 2g | Monounsaturated Fat: 7g | Trans Fat: 0.003g | Cholesterol: 27mg | Sodium: 152mg | Potassium: 110mg | Fiber: 1g | Sugar: 10g | Vitamin A: 1824IU | Vitamin C: 1mg | Calcium: 44mg | Iron: 1mg
Did you make this recipe?Let me know what you thought in the comments below!

Want to learn more about oat flour? Check out these resources!

  • The Ultimate Guide to Oat Flour
  • Oat Flour vs. Wheat Flour
  • The Best Oat Flour Recipes
  • Oat Flour Cookie Tips
  • Oat Flour Muffin Tips
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    Eatmore Bars (Healthy Copycat)
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Comments

    5 from 33 votes (33 ratings without comment)

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  1. Miriam Cruz says

    March 26, 2024 at 11:26 am

    Hi!! I LOVE your recipes!! The instructions say to ad the pumpkin, but I don’t think there should be any in this recipe. I assume we should just ignore that but let me know if I’m missing something 🙂 thank you for sharing these!!! I’m celiac AND have a severe tree nut allergy, and your banana muffins have been my favorite. Excited to try more!!!!

    Reply
    • Janessa says

      March 26, 2024 at 12:02 pm

      Oh whoops! It should say applesauce, not pumpkin. I initially tested the recipe with pumpkin but preferred it more with applesauce in later tests but I guess I missed a spot to change it. I'll change it now- thank you!
      I'm glad you enjoy my recipes, thank you for your kind comment!!

      Reply
  2. Keala says

    March 23, 2025 at 3:14 pm

    Would this work with half the amount of sugar? And maple syrup instead? I am trying to find a recipe with oat flour that doesnt have a lot of sugar, but has eggs and for a baby. Oat flour is only kind she can tolerate right now and it is time to trial eggs. Ironically having an easier time finding low sugar egg free oat recipes than ones with egg. This one looks really good. Just too much sugar for a baby. She can’t have apples, but can actually tolerate pineapple more so I would try it with pineapple.

    Reply
    • Janessa says

      March 23, 2025 at 5:24 pm

      Hi Keala, you could halve the sugar (though I make my recipes on the less sweet side already so they might be a bit bitter) but I don't recommend using a liquid sweetener as it will impact the texture. I have multiple recipes which include eggs and oats that might be a better fit for your purposes (these Pumpkin Oat Muffins, Oat Flour Bread - you can use maple syrup instead of honey or Oatmeal Pancakes (No Banana) all might work?). But I hope you get a chance to make these cupcakes at some point as they are one of my favorites! Good luck 🙂

      Reply
Janessa

Hi, I'm Janessa and I'm passionate about sharing recipes that are made with wholesome ingredients, are quick and easy and most importantly, delicious!

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